Ahh! Questions are welcome, too! I find it easier to explain something once asked

A rundown on the methods:
Method A, as Zoggles states, allows one to have evenly sized facets (sides) AND the use of a centered 1px line. The only drawback is that one must break any opportunity for tiling under this system. So it is ideal for individual works with no intent to use them in a grid.
Method B does allow for equal facet size, however that would require you use a 2px wide outline, so 'normally' one must draw slightly left, or slightly right of center, so you would not get even facets with 1px vertical dividing outlines. Alternatively, you could simply have no vertical outline, thus you would once again have equal facets (which can be a rather attractive method for doing iso). In some of the work I have seen, including a work by RhysD, 3 pixel-wide elements were included in order to get A style vertices in a B style work.
Method C has some strengths over B, and vice versa, which seems to be the main question you're raising. With method C, the root of design is centered around the use of joints, which is key in creating tiles for games. These 2x4 sized blocks make it easier to duplicate and align to the framework as you drag things along. Also, this joint method allows for extremely fast zig-zag line snapping that is slightly more accurate and efficient compared to method B. Furthermore, method C is much more able to cope with 'outlining' problems than B. FFT-A used this method, though maps were not as modular as something done with method B
As Zoggles points out in his tutorial, the Offset (B) method is somewhat restricted in the placement of outlines (usually located at the top), and you may encounter some issues when trying to create cubes then going back and working from a pattern filled grid (sometimes the angled lines inside your cube would be 'offset' by half a step). On the bright side, B is much more straightforward than C. A and B are very good for the pixel art novice to learn from. Method B is very liberating and allows for quick freeforming.
If we disregard the outline placement issues, methods B and C are actually separate but equal styles. I think it has more to do with how you're rendering them for software in the form of tiles.