So If I have gotten this right you are having him naked so you can add interchangeable equipment to the character. In this case... my attempt at an anatomy review.
I think I am getting pretty good at anatomy
(a statement that usually hails a stream of retaliatory corrections from others). I have attempted an edit though not finished it better demonstrates how a person should look (if they are crazy toned).
*I recommend killing the anime head and going for a more realistic look as it looks more badass and seems to better suite the way you shade.
*One thing about conveying muscles is that they are covered in a nice layer of skin, something your guy seems to have a paper thin sheet of. Remove the drastic lines separating muscles and make it a bit more subtle.
*Its true that you have made up the muscle anatomy a little but the lines you have got there can still serve as some guide as you progress, in fact I used them to help with my edit at times.
*My edit might not be finished but one big thing I noticed was the way the arms where attached, you really need to re-proportion those he seems to have some nasty tumors popping up on his shoulders making them f*ing huge.
*A lot of the details of the abs and legs are obscure. I think that you shouldn't worry about the censoring. Just leaving the penis out is fine as you need to know where the pelvis is if you are going to be attaching the leg and ab muscles correctly.
*Your characters abs are very blocky, this gives the impression he cant move them. Remember to give your character a flexi-spine and let the muscles shape to accompany that flexibility.
I hope these things along with the edit help you out a bit. If I recall anything else I wanted to mention I will be back.