The game is very cool and unique.
I like the idea of a RTS Shmup, very cool.
I like that you can control your squad pretty decently.
As for the ships I think your trying to pack too much small pixel detial into these.
And it's kind of making them messy and hard to read the actual shape.
You have two colors that look quite a like and at 1x zoom you don't see that detail.